A B C D E G H I J K L N O P Q R S T U W X

A

addIndividuals(String) - Method in interface requester.OntManagerIF

handing over a list of new individual that are to be added to the ontology.

addIndividuals(String) - Method in class requester.OntManagerImpl

addReport(String) - Method in interface requester.OntManagerIF

addReport: generates the instances for one report (case report + subclasses AND instances for swpatho2.owl).

addReport(String) - Method in class requester.OntManagerImpl

B

BASE_URI - Static variable in class requester.Data

BEFUND_COLLECTION_PATH - Static variable in class requester.Data

The path to the collection in Xindice 1.0 for the initial configuration

C

calculateSimilarity(String, String) - Static method in class requester.XmlLib

calculateSimilarity: calculates edit distance between two strings

D

Data - class requester.Data.

Data() - Constructor for class requester.Data

deleteAllIndividuals() - Method in interface requester.OntManagerIF

deleteAllIndividuals: deletes all Individuals!

deleteAllIndividuals() - Method in class requester.OntManagerImpl

deleteWhitespaces(String) - Static method in class requester.XmlLib

deleteWhitespaces, replaces whitespaces and ',' with '_' (naming conventions).

destroy() - Method in class requester.OntManagerImpl

doReport(String) - Method in class requester.GenerateReportInstances

creates individuals for a report including all sections.

E

escapeHTML(String) - Static method in class requester.XmlLib

extractConcepts(String) - Static method in class requester.WSAccessLib

extracts Concepts out of a xml string returned by the UP Web Service

G

GenerateReportInstances - class requester.GenerateReportInstances.

Title: Description: Accessible through a button in editor, reads 50 reports and uses UP Web Service to analyze them.

GenerateReportInstances(OntModel) - Constructor for class requester.GenerateReportInstances

generateXMLString(Document) - Static method in class requester.XmlLib

writes a DOM Document as a XMl String

getCaseReportsOfIndividual(String) - Method in interface requester.OntManagerIF

getCaseReportsOfIndividual(String) - Method in class requester.OntManagerImpl

getConcept(String) - Method in interface requester.OntManagerIF

getConcept: Used by UP Web service, gets a concept name and tries to find a concept.

getConcept(String) - Method in class requester.OntManagerImpl

getConceptAdj(String) - Method in interface requester.OntManagerIF

getConceptAdj: Searches for a concept combined with an adjective.

getConceptAdj(String) - Method in class requester.OntManagerImpl

getDiagnosis() - Method in interface requester.OntManagerIF

getDiagnosis() - Method in class requester.OntManagerImpl

getExistingRelation(String) - Method in interface requester.OntManagerIF

getExistingRelation(String) - Method in class requester.OntManagerImpl

getIndividualCount(OntModel) - Static method in class requester.JenaLib

getIndividualCount() - Method in interface requester.OntManagerIF

getIndividualCount: returns number of individuals in A-Box

getIndividualCount() - Method in class requester.OntManagerImpl

getNewDocument() - Static method in class requester.XmlLib

creates a new empty Document

getPathReportID(String) - Method in interface requester.OntManagerIF

getPathReportID: gets a URI of an Individual and returns the ID of a Pathology_Report-Individual.

getPathReportID(String) - Method in class requester.OntManagerImpl

getRelations(String) - Method in interface requester.OntManagerIF

getRelations: gets two concepts (uris) and returns a list of relations, that are between these concepts.

getRelations(String) - Method in class requester.OntManagerImpl

getReportsContainingConcept(String) - Method in class requester.OntManagerImpl

getSuperClasses(String) - Method in interface requester.OntManagerIF

getSuperClasses(String) - Method in class requester.OntManagerImpl

H

hasSuperClass(OntClass) - Static method in class requester.JenaLib

I

init() - Method in interface requester.OntManagerIF

init: method, that has to be called once before communicating with the Web service.

init() - Method in class requester.OntManagerImpl

isSubclassOf(OntClass, OntClass) - Static method in class requester.JenaLib

J

JenaLib - class requester.JenaLib.

Title: Database connection with Jena and Jena help functions Description: Copyright: Copyright (c) 2004 Company:

JenaLib() - Constructor for class requester.JenaLib

K

killUmlaute(String) - Static method in class requester.XmlLib

L

LOCAL_BB - Static variable in class requester.Data

LOCAL_IMMUNO - Static variable in class requester.Data

LOCAL_INDS - Static variable in class requester.Data

LOCAL_SN - Static variable in class requester.Data

LOCAL_SWPATHO - Static variable in class requester.Data

LOCAL_UPPER - Static variable in class requester.Data

N

NS_BB - Static variable in class requester.Data

NS_IMMUNO - Static variable in class requester.Data

NS_INDS - Static variable in class requester.Data

NS_SN - Static variable in class requester.Data

NS_SWPATHO - Static variable in class requester.Data

Ontology/Namespace Information

NS_UPPER - Static variable in class requester.Data

nodes2rdf(Vector, int) - Static method in class requester.XmlLib

generates a rdf xml string out of a Vector of DOM Nodes.

normalizeWord(String) - Static method in class requester.JenaLib

normalizeString Before a query, the String is normalized, changing the first letter to lower case

O

ONTMANAGER_ENDPOINT - Static variable in class requester.Data

ONTMANAGER_PORT - Static variable in class requester.Data

ONTMANAGER_SERVICE - Static variable in class requester.Data

Server Information

OntManagerIF - interface requester.OntManagerIF.

OntManagerImpl - class requester.OntManagerImpl.

OntManagerImpl() - Constructor for class requester.OntManagerImpl

openFile(String) - Static method in class requester.XmlLib

reads a file into a DOM

openOntology(String, String) - Static method in class requester.JenaLib

opens an Ontology and returns it

openOntologyHTTP(String, String) - Static method in class requester.JenaLib

openSwpathoOntology() - Static method in class requester.JenaLib

P

PICTURE_COLLECTION_PATH - Static variable in class requester.Data

PropertyElem - class requester.PropertyElem.

Überschrift: PropertyElem Beschreibung: Datatype containing all important information about OWL-property Copyright: Copyright (c) 2004 Organisation:

PropertyElem() - Constructor for class requester.PropertyElem

PropertyElem(String, String, String, String, String) - Constructor for class requester.PropertyElem

Q

query(String, OntModel) - Static method in class requester.JenaLib

query(String) - Method in interface requester.OntManagerIF

query: executes an RDQL-query. !!!

query(String) - Method in class requester.OntManagerImpl

query2(String, OntModel) - Static method in class requester.JenaLib

query2(String) - Method in interface requester.OntManagerIF

query2: executes an RDQL-query that asks for two parameters.

query2(String) - Method in class requester.OntManagerImpl

R

requester - package requester

S

saveFile(Document, String) - Static method in class requester.XmlLib

saves a DOM Document to a specified file in XML format, overwrites it if exists

saveModel(String, OntModel, String) - Static method in class requester.JenaLib

writes model m to file outputFile, overwrites the file if exists

saveModels() - Method in interface requester.OntManagerIF

saveModels: Saves model to individuals.owl.

saveModels() - Method in class requester.OntManagerImpl

searchBest(String) - Method in interface requester.OntManagerIF

searchBest: gets a concept name and searches for the concept that matches best.

searchBest(String) - Method in class requester.OntManagerImpl

send(String) - Static method in class requester.WSAccessLib

send

string2xml(String) - Static method in class requester.XmlLib

generates a DOM Document out of a XML String

T

testDataFile - Static variable in class requester.Data

Server Information

U

unescapeHTML(String, int) - Static method in class requester.XmlLib

converts escaped string to real html (e.g.

W

WSAccessLib - class requester.WSAccessLib.

Title: Description: interface between UP Web Service and Application Copyright: Copyright (c) 2004 Company:

WSAccessLib() - Constructor for class requester.WSAccessLib

X

XINDICE_DRIVER - Static variable in class requester.Data

The database driver for Xindice 1.0

XmlLib - class requester.XmlLib.

Title: pathoEdit Description: Editor für Befundberichte - FU Berlin 2003 Copyright: Copyright (c) 2003 Class Description: various functions around reading and writing the xml files Company:

XmlLib() - Constructor for class requester.XmlLib

A B C D E G H I J K L N O P Q R S T U W X